Fig. 4: Benchmarking of cell clustering performance. | Nature Communications

Fig. 4: Benchmarking of cell clustering performance.

From: EpiScanpy: integrated single-cell epigenomic analysis

Fig. 4: Benchmarking of cell clustering performance.

Adjusted rand index (ARI) for Louvain clustering in a Buenrostro et al.40 dataset for bulk peaks with 2,034 cells, b Buenrostro et al.40 dataset with 150,429 open features and 2,034 cells, c Cusanovich et al.4 mouse atlas downsampled to 12,178 cells, d full Cusanovich et al.4 mouse atlas with 81,173 cells. EpiScanpy performance results are compared to the results of 11 other scATAC-seq methods benchmarked in Chen et al.11. The dotted lines indicate epiScanpy’s ARI value.

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