Table 1 Examples of MAGE-TAB-Proteomics files.

Label-free

PXD008934

https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects/PXD008934

TMT, CPTAC dataset not in PX

https://cptac-data-portal.georgetown.edu/study-summary/S029³⁶

https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects/PMID33212010

SILAC

PXD006877

https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects/PXD006877

Phospho-proteomics

PXD006482

https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects/PXD006482

Label-free, multiple fragmentation modes and various enzymes

PXD010154

https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects/PXD010154

AP-MS interactomics

PXD018117

https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects/PXD018117

TMT

PXD017710

https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects/PXD017710

Label-free

PXD004242

https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects/PXD004242

DIA

PXD003539

https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects/PXD003539

Metabolomics

MSV000086206 [https://doi.org/doi:10.25345/C5HV0S]

https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects/MSV000086206