Fig. 2: Recombination analysis.
From: A novel SARS-CoV-2 related coronavirus in bats from Cambodia
a Sliding window analysis of changing patterns of sequence similarity between SARS-CoV-2 and related coronaviruses from China and Cambodia. CoVZXC21 and CoVZC45 were merged for this analysis. Source data are provided as a Source Data file. b Phylogenetic tree of different genomic regions. From left to right, region spanning: nsp1-nsp3, nsp4-nsp8, rdrp-nsp16, spike N terminal domain (NTD), spike receptor binding domain (RBD), orf3-N. Branch support obtained from 1000 bootstrap replicates are shown. SARS-CoV and SARS-CoV-2 sequences are collapsed, and trees are midpoint rooted for clarity.
