Table 2 Atom chemical properties included in the study.
From: Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures
Feature | Description |
|---|---|
Carbon | 1 if the atom is carbon, 0 otherwise (boolean) |
Nitrogen | 1 if the atom is nitrogen, 0 otherwise (boolean) |
Oxygen | 1 if the atom is oxygen, 0 otherwise (boolean) |
Phosphorus | 1 if the atom is phosphorus, 0 otherwise (boolean) |
Atom degree | Total number of covalent bonds around an atom (integer) |
Implicit valence | It equals the valence of the atom minus the valence calculated from the bond connections (integer) |
Number of hydrogens | Total count of hydrogens (integer) |
Aromaticity | 1 if atom in an aromatic ring, 0 otherwise (boolean) |
