Table 3 Hyperparameters searched in the study.
From: Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures
Parameters | Space searched | ATGC DNA | AUGC RNA | A(6mA)UGC RNA |
|---|---|---|---|---|
The number of GCN layers | {2, 3, 4, 5, 6} | 4 | 4 | 6 |
The number of CNN layers | {2, 3, 4, 5, 6} | 3 | 5 | 6 |
The kernel size for the CNN layers | {2, 4, 10, 20} | 10 | 10 | 10 |
The number of nodes in the dense (NN) layer | {32, 128, 512, 2048, 8192} | 8192 | 8192 | 8192 |
