Fig. 5: Bayesian Skygrid and BDSKY analysis reveal spatiotemporal independent population dynamics of Cluster A, C and D. | Nature Communications

Fig. 5: Bayesian Skygrid and BDSKY analysis reveal spatiotemporal independent population dynamics of Cluster A, C and D.

From: Adaptation, spread and transmission of SARS-CoV-2 in farmed minks and associated humans in the Netherlands

Fig. 5

a Estimation of effective population size (Ne) by Skygrid analysis for Cluster A (red), C (green) and D (blue) sequences. The logarithmic effective number of infections viral generation time (t) representing effective transmissions is plotted over time. 95% HPD intervals are plotted in lighter colours. Vertical dashed line is the mean TMRCA. b Estimation of reproductive number (Re) by BDSKY analysis of Cluster A (red), C (green) and D (blue) sequences. The shaded portion is the 95% HPD interval, and the solid line is the posterior median. Vertical dashed line is the mean TMRCA.

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