Table 1 TAP-MS data for AtEPL1B combined with metaanalysis of the previously published AP-MS experiments using NuA4 subunits as baits.
From: NuA4 and H2A.Z control environmental responses and autotrophic growth in Arabidopsis
Sc name | At gene | At name | AtARP4 | AtARP4 | AtSWC4 | HAM1 | HAM2 | AtEPL1A | AtEPL1B | AtYAF9A | AtEPL1B | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Complexes | – | – | – | NuA4, SWR1, SWI/SNF, INO80 | NuA4, SWR1, SWI/SNF, INO80 | NuA4, SWR1 | NuA4, PEAT | NuA4, PEAT | NuA4 | NuA4 | NuA4, SWR1 | NuA4 |
Model | – | – | – | Cell culture | Cell culture | Cell culture | Seedlings | Seedlings | Seedlings | Seedlings | Seedlings | |
Promoter | – | – | – | CaMV35S | UBQ10 | UBQ10 | Native | Native | Native | Native | CaMV35S | Native |
Tag | – | – | – | GS TAP tag | Strep | Strep | Myc | Myc | Flag | Flag | GH TAP tag | GS TAP tag |
Reference | – | – | – | Vercruyssen | Bieluszewski | Bieluszewski | Tan | Tan | Tan | Tan | Crevillen | This work |
Conserved NuA4 subunits | ARP4 | AT1G18450 | AtARP4 | + | + | + | + | + | + | + | + | 2/1.78 |
AT1G73910 | AtARP4A | – | + | + | – | – | – | – | – | – | ||
SWC4 | AT2G47210 | AtSWC4 | – | + | + | + | – | + | + | + | 2/1.63 | |
YAF9 | AT5G45600 | AtYAF9A | + | + | + | + | + | + | + | + | 2/1.42 | |
AT2G18000 | AtYAF9B | – | – | + | – | – | – | + | – | – | ||
EAF1 | AT3G24880 | AtEAF1A | – | + | + | + | + | + | + | + | 2/0.42 | |
AT3G24870 | AtEAF1B | – | + | + | + | – | – | – | – | 2/0.43 | ||
TRA1 | AT2G17930 | AtTRA1A | – | – | – | – | – | + | + | – | 2/0.37 | |
AT4G36080 | AtTRA1B | – | – | + | – | + | + | + | – | 2/0.44 | ||
ESA1 | AT5G64610 | HAM1 | – | + | + | + | – | + | + | + | 2/0.95 | |
AT5G09740 | HAM2 | – | – | + | – | + | – | – | – | 1/0.16 | ||
EPL1 | AT1G16690 | AtEPL1A | – | – | + | + | – | + | – | – | – | |
AT1G79020 | AtEPL1B | – | + | + | – | + | – | + | – | 2/2.22 | ||
YNG2 | AT1G54390 | AtING2 | – | + | + | + | – | + | + | – | 2/1.50 | |
EAF6 | AT4G14385 | AtEAF6 | – | + | + | + | – | + | + | – | 2/1.96 | |
EAF3 | AT4G37280 | MRG1 | – | – | + | + | – | – | – | – | 2/0.29 | |
AT1G02740 | MRG2 | – | – | – | – | – | – | – | – | – | ||
EAF5 | – | – | – | – | – | – | – | – | – | – | – | |
EAF7 | AT1G26470 | AtEAF7 | – | – | + | – | – | – | – | – | – | |
Additional AtEPL1B interactors detected here | AT2G31810 | AHASS1 | – | – | – | – | – | – | – | – | 2/0.21 | |
AT3G07810 | AOG2 | – | – | – | + | – | – | – | – | 2/0.18 | ||
AT3G60110 | BRD6 | – | – | + | + | – | – | – | – | 2/0.06 | ||
AT1G48520 | GATB | – | – | – | – | – | – | – | – | 1/0.06 | ||
AT1G26570 | UGD1 | – | – | – | – | – | – | – | – | 1/0.04 | ||
Number of additional bait-specific hits | 2 | 454 | 1104 | 331 | 280 | 96 | 241 | 114 | 0 | |||
