Table 2 Nonredundant single-contig genomes assembled from nanopore sequencing.

From: Short- and long-read metagenomics of urban and rural South African gut microbiomes reveal a transitional composition and undescribed taxa

Classification

Size (Mb)

Quality

16S rRNAs

GC (%)

GC Skew

Alistipes putredinis

1.91

Medium

2

53.1

0.96

Anaerotruncus sp.

2.04

Medium

2

43.71

0.94

Bacilli bacterium

1.46

Medium

1

26.19

0.93

Bacteroidales bacterium

2.79

High

4

49.82

0.92

Bacteroidales bacterium

1.7

Medium

1

56.6

0.7

Bacteroides vulgatus

2.68

Medium

3

42.71

0.84

Candidatus Melainabacteriaa

2

Medium

1

30.9

0.32

Catabacter sp.a

1.65

Medium

1

46.4

0.87

Clostridiales bacterium

1.53

Medium

1

47.28

0.94

Clostridiales bacterium

2.65

Medium

3

42.82

0.69

Clostridiales bacterium

1.61

Medium

1

46.9

0.94

Clostridium sp.

1.53

Medium

1

25.24

0.89

Clostridium sp.

1.3

Medium

1

46.87

0.8

Clostridium sp.

2.01

Medium

3

28.81

0.92

Clostridium sp.

1.14

Medium

1

29.09

0.7

Lentisphaeria bacteriumb

5.08

Medium

3

57.5

0.69

Porphyromonadaceae bacterium

2.97

Medium

5

47.43

0.76

Ruminococcaceae bacterium

2.27

High

3

51.43

0.91

Ruminococcaceae bacterium

1.78

Medium

3

58.25

0.63

Treponema sp.

2.06

Medium

3

41.55

0.93

Treponema succinifaciens

2.55

High

4

39.12

0.82

uncultured Ruminococcus

2.08

Medium

5

46.85

0.69

  1. anMAGs gained by long-read polishing.
  2. bnMAGs improved by long-read polishing.