Table 1 Datasets used for benchmarking study.
Dataset | Instrument | Samples | Batches | Conditions | Cells (million) | Markers | FlowRepository ID | Originally used for tool |
|---|---|---|---|---|---|---|---|---|
Van Gassen43 | CyTOF2.0 | 40a | 10 | 2 | 6.2 | 37 | FR-FCM-Z247 | CytoNorm18 |
Trussart28 | Helios | 24a | 2 | 2 | 8.6 | 31 | FR-FCM-Z2L2 | CytofRUV28 |
Krieg138 | Helios(2.1) | 60 | 4 | 3 | 1.1 | 30 | FR-FCM-ZY34 | iMUBAC29 |
Krieg238 | Helios(2.1) | 60 | 4 | 3 | 1.7 | 26 | FR-FCM-ZY34 | iMUBAC |
Krieg338 | Helios(2.1) | 60 | 4 | 3 | 0.3 | 25 | FR-FCM-ZY34 | iMUBAC |
OgishiCyTOF29 | Helios | 57a | 7 | 3 | 12.4 | 38 | FR-FCM-Z3YK | iMUBAC |
OgishiSFC29 | Aurora | 14 | 2 | 3 | 9.7 | 18 | FR-FCM-Z3YL | iMUBAC |
DFCI1 | Helios | 128 | 7 | 2 | 6.0 | 36 | FR-FCM-Z52G | cyCombine |
DFCI2 | Helios | 112 | 7 | 2 | 6.8 | 34 | FR-FCM-Z52G | cyCombine |
DFCIb3 | Helios | 39a | 2 | 2 | 1.9 | 15 | FR-FCM-Z52G | cyCombine |