Table 1 Datasets used for benchmarking study.

From: cyCombine allows for robust integration of single-cell cytometry datasets within and across technologies

Dataset

Instrument

Samples

Batches

Conditions

Cells (million)

Markers

FlowRepository ID

Originally used for tool

Van Gassen43

CyTOF2.0

40a

10

2

6.2

37

FR-FCM-Z247

CytoNorm18

Trussart28

Helios

24a

2

2

8.6

31

FR-FCM-Z2L2

CytofRUV28

Krieg138

Helios(2.1)

60

4

3

1.1

30

FR-FCM-ZY34

iMUBAC29

Krieg238

Helios(2.1)

60

4

3

1.7

26

FR-FCM-ZY34

iMUBAC

Krieg338

Helios(2.1)

60

4

3

0.3

25

FR-FCM-ZY34

iMUBAC

OgishiCyTOF29

Helios

57a

7

3

12.4

38

FR-FCM-Z3YK

iMUBAC

OgishiSFC29

Aurora

14

2

3

9.7

18

FR-FCM-Z3YL

iMUBAC

DFCI1

Helios

128

7

2

6.0

36

FR-FCM-Z52G

cyCombine

DFCI2

Helios

112

7

2

6.8

34

FR-FCM-Z52G

cyCombine

DFCIb3

Helios

39a

2

2

1.9

15

FR-FCM-Z52G

cyCombine

  1. aCounting replicates as distinct samples.