Fig. 2: Extending utilization of ecModels. | Nature Communications

Fig. 2: Extending utilization of ecModels.

From: Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

Fig. 2

a ecModels container: Integrated pipeline for continuous and automated update of ecModels. b Implementation of GECKO simulations in the Caffeine platform (https://caffeine.dd-decaf.eu/) for visualization of enzyme usage. The color of the arrows corresponds to the value of the corresponding fluxes. Genes or reactions connected to enzymes with a usage above 90% are highlighted with a glow around the corresponding text or arrow, respectively. The chosen usage threshold to highlight can be tuned with the slider on the right.

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