Table 1 Association results for the imputed and directly genotyped lead variants

From: A common deletion at BAK1 reduces enhancer activity and confers risk of intracranial germ cell tumors

SNP

Genotyping

Chr

Position (NCBI build 37)

Alleles

Risk Allele

Freq. Case

Freq. Ctrl

Odds Ratio (95% CI)

P value

rs3831846

Imputed

6

33,548,346

TGTAA/T

T

0.63

0.43

2.46 (1.83–3.31)

2.4 × 10−9

rs210138

Directly genotyped

6

33,542,538

A/G

G

0.63

0.43

2.39 (1.78–3.21)

7.2 × 10−9

  1. Freq. Case, risk allele frequency in cases; Freq. Ctrl, risk allele frequency in controls. All statistical tests are two-sided and not adjusted for multiple comparisons.
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