Fig. 1: Triggered transient formation and depletion of a DNAzyme. | Nature Communications

Fig. 1: Triggered transient formation and depletion of a DNAzyme.

From: Cascaded dissipative DNAzyme-driven layered networks guide transient replication of coded-strands as gene models

Fig. 1

a Triggered transient operation of a reaction module consisting of duplex A/A’ (0.2 μM), hairpin H1 (1 μM) and Mg2+-ions, resulting in a Mg2+-ion-dependent DNAzyme T1/A. b Transient concentrations corresponding to: (i)-solid line, the formation and depletion of the Mg2+-ion-dependent DNAzyme T1/A in the presence of trigger T1 = 0.3 μM, and (i’)-dashed line, computationally-simulated transient using the kinetic model presented in Supplementary Fig. 2. Transient and computational predicted curves (ii)/(ii’), corresponding to the T1-triggered formation/depletion of DNAzyme T1/A in the presence of T1 = 0.2 μM, and (iii)/(iii’) transient and computationally predicted curves, corresponding to the formation/depletion of DNAzyme T1/A in the presence of T1 = 0.4 μM. Insert: Time dependent dynamic evolution of T1/A at short time intervals: (i) in the presence of trigger T1 = 0.3 μM, (ii) in the presence of trigger T1 = 0.2 μM, (iii) in the presence of trigger T1 = 0.4 μM (For the half-life values of the transients, see Supplementary Fig. 6.). c Cyclic operation of the transient DNAzyme cycle (T1 = 0.4 μM) shown in a. Arrows indicate the addition of the trigger T1. Source data are provided as a Source Data file.

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