Fig. 2: Assessment of CAPITAL’s feasibility in clustering quality on the synthetic datasets.
From: Alignment of single-cell trajectory trees with CAPITAL
a A test in global topological similarity on 53,987 pairs of trajectories. Reference shows the results of trajectory alignments with no nodes in one trajectory tree removed. The other cases where a node was removed in one trajectory tree are classified into seven types. A number shown in parentheses on the horizontal axis shows the number of children of the node to be removed. 10 nearest neighbors were considered to build the nearest neighbor graphs. b A test in clustering similarity on 6800 pairs of trajectories. The number of nearest neighbors used is five. c A test in clustering resolution on 40,800 pairs of trajectories. The box plots show the median with bounds for the first and the third quartiles, and the whiskers indicate the minimum and the maximum that exclude outliers represented by points. Source data are provided in the Source Data file.
