Table 1 NMR restraints and structural statistics for the free KRAS-G4 and its complex with berberine and coptisine

From: Structural insight into the bulge-containing KRAS oncogene promoter G-quadruplex bound to berberine and coptisine

 

KRAS-G4

BER-KRAS-G4

COP-KRAS-G4

NOE-Based Distance Restraints

Total

745

728

686

Intra-residue

516

446

432

Inter-residue

   

Sequential

156

185

163

Long-range

73

60

54

Ligand-G4

-

37

37

Other restraints

Hydrogen bonds

48

48

48

Torsion angles

24

24

24

G-tetrad planarity

48

48

48

Structural statistics

Pairwise heavy atom RMSD (Å)

G-tetrad core

0.58 ± 0.21

0.58 ± 0.17

0.49 ± 0.15

All residues

0.71 ± 0.21

0.75 ± 0.16

0.64 ± 0.14

Restraint violations (Å)

Max. NOE

0.12

0.14

0.12

Mean NOE

0.001 ± 0.006

0.002 ± 0.010

0.001 ± 0.008