Table 3 On-target and off-target scoring methods currently available in crisprScore

From: A comprehensive Bioconductor ecosystem for the design of CRISPR guide RNAs across nucleases and technologies

Nuclease

Variant

Method

Type

Reference

SpCas9

WT

Rule Set 1

On-target efficiency

7

 

WT

Azimuth

On-target efficiency

8

 

WT

Rule Set 3

On-target efficiency

74

 

WT

CRISPRscan

On-target efficiency

12

 

WT

CRISPRai

On-target efficiency

13

 

WT

DeepHF

On-target efficiency

9

 

HiFi

DeepHF

On-target efficiency

9

 

WT

Lindel

On-target efficiency

46

 

WT

DeepSpCas9

On-target efficiency

45

 

WT

CRISPRater

On-target efficiency

48

 

WT

MIT

Off-target cutting

57

 

WT

CFD

Off-target cutting

6

AsCas12a

WT

DeepCpf1

On-target efficiency

10

 

Enhanced

enPAM+GB

On-target efficiency

22

RfxCas13d

WT

CasRx-RF

On-target efficiency

47

 

WT

CasRx-CFD

Off-target cutting

104