Table 1 Run time and memory usage
From: De novo identification of microbial contaminants in low microbial biomass microbiomes with Squeegee
Test set 1 | Test set 2 | Test set 3 | |
|---|---|---|---|
Input size (GB) | 59.2 | 59.2 | 118.0 |
# of potential contaminants | 15 | 18 | 26 |
CPU hours | 55.5 | 63.3 | 130.3 |
Peak memory usage including Kraken (GB) | 320.4 | 320.4 | 322.0 |
