Fig. 4: Phylogenetic analysis of H37Rv strains used in the study.
From: A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome
H37Rv strains were assembled with Bact-Builder, sequence alignment was completed using Bowtie2 via REALPHY68 (https://realphy.unibas.ch/fcgi/realphy), and a maximum likelihood tree was constructed with RaxML69. The tree was rooted with BCCM 083, a M. tuberculosis Lineage 1 strain70.
