Table 1 H37Rv.1-3 individual assembly results, and DNAdiff analysis comparing individual assemblies to the H37Rv reference (H37Rv ref)
From: A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome
Name | # of contigs | Size (bp) | SNP counta | Indel countb | RD countc |
|---|---|---|---|---|---|
H37Rv ref | 1 | 4411532 | – | – | – |
H37Rv.1 canu1 | 1 | 4446966 | 109 | 2005 | 10 |
H37Rv.1 canu 2 | 3 | 4483900 | 110 | 1989 | 13 |
H37Rv.1 canu 3 | 1 | 4444289 | 110 | 2019 | 10 |
H37Rv.1 flye 1 | 1 | 4416736 | 123 | 1251 | 9 |
H37Rv.1 flye 2 | 1 | 4416759 | 133 | 1234 | 9 |
H37Rv.1 flye 3 | 1 | 4416479 | 126 | 1248 | 9 |
H37Rv.1 miniasm 1 | 1 | 4416466 | 241 | 2961 | 9 |
H37Rv.1 miniasm 2 | 1 | 4416251 | 240 | 2841 | 9 |
H37Rv.1 miniasm 3 | 1 | 4416359 | 240 | 2841 | 9 |
H37Rv.1 raven 1 | 1 | 4414975 | 159 | 1909 | 11 |
H37Rv.1 raven 2 | 1 | 4422017 | 140 | 1916 | 10 |
H37Rv.1 raven 3 | 1 | 4418092 | 149 | 1835 | 11 |
H37Rv.1 Trycycler | 1 | 4416834 | 110 | 1157 | 8 |
H37Rv.1 Bact-Builder | 1 | 4417941 | 109 | 36 | 10 |
H37Rv.2 canu1 | 1 | 4429379 | 113 | 2301 | 9 |
H37Rv.2 canu 2 | 1 | 4427845 | 111 | 2323 | 9 |
H37Rv.2 canu 3 | 1 | 4423645 | 110 | 2326 | 9 |
H37Rv.2 flye 1 | 1 | 4408125 | 125 | 1386 | 10 |
H37Rv.2 flye 2 | 1 | 4414937 | 133 | 1377 | 9 |
H37Rv.2 flye 3 | 1 | 4414949 | 137 | 1377 | 9 |
H37Rv.2 miniasm 1 | 5 | 4406947 | 137 | 1896 | 11 |
H37Rv.2 miniasm 2 | 4 | 4415501 | 130 | 1246 | 12 |
H37Rv.2 miniasm 3 | 4 | 4416498 | 125 | 1852 | 10 |
H37Rv.2 raven 1 | 2 | 4424323 | 107 | 1727 | 24 |
H37Rv.2 raven 2 | 1 | 4410082 | 197 | 1638 | 30 |
H37Rv.2 raven 3 | 1 | 4410082 | 197 | 1638 | 30 |
H37Rv.2 Trycycler | 1 | 4416448 | 114 | 1538 | 8 |
H37Rv.2 Bact-Builder | 1 | 4417942 | 109 | 35 | 10 |
H37Rv.3 canu 1 | 1 | 4428104 | 123 | 5436 | 10 |
H37Rv.3 canu 2 | 1 | 4419097 | 121 | 5537 | 10 |
H37Rv.3 canu 3 | 1 | 4419406 | 131 | 5465 | 9 |
H37Rv.3 flye 1 | 4 | 4416882 | 201 | 2825 | 11 |
H37Rv.3 flye 2 | 4 | 4425435 | 190 | 2846 | 15 |
H37Rv.3 flye 3 | 4 | 4426660 | 196 | 2885 | 16 |
H37Rv.3 miniasm 1 | 1 | 4421693 | 158 | 3350 | 11 |
H37Rv.3 miniasm 2 | 1 | 4414787 | 173 | 3619 | 10 |
H37Rv.3 miniasm 3 | 1 | 4412379 | 190 | 3609 | 12 |
H37Rv.3 raven 1 | 1 | 4410598 | 164 | 3385 | 25 |
H37Rv.3 raven 2 | 1 | 4411303 | 141 | 3134 | 21 |
H37Rv.3 raven 3 | 1 | 4409434 | 188 | 3119 | 21 |
H37Rv.3 Trycycler | 1 | 4415585 | 114 | 2400 | 8 |
H37Rv.3 Bact-Builder | 1 | 4417942 | 109 | 37 | 10 |
