Table 1 Assembly and annotation statistics of the 18-genome data package
Acronyms | Variety name/Accession ID | Species/genome | Subpopulationa | GenBank accession | Assembly size (Mb) | Repeat | Annotated locib |
|---|---|---|---|---|---|---|---|
IRGSP | IRGSP-1.0/NIPPONBARE | O. sativa-AA (Asian rice) | GJ-temp | GCA_001433935.1 | 373.25 | 51.79% | 37,140 |
CMeo | CHAO MEO::IRGC 80273-1 | O. sativa-AA (Asian rice) | GJ-subtrp | GCA_009831315.1 | 376.86 | 47.41% | 36,601 |
Azu | Azucena | O. sativa-AA (Asian rice) | GJ-trop1 | GCA_009830595.1 | 379.63 | 52.56% | 36,623 |
KeNa | KETAN NANGKA::IRGC 19961-2 | O. sativa-AA (Asian rice) | GJ-trop2 | GCA_009831275.1 | 380.76 | 50.30% | 36,609 |
ARC | ARC 10497::IRGC 12485-1 | O. sativa-AA (Asian rice) | cB | GCA_009831255.1 | 378.46 | 49.50% | 36,423 |
PR106 | PR 106::IRGC 53418-1 | O. sativa-AA (Asian rice) | XI−1B2 | GCA_009831045.1 | 391.18 | 50.45% | 36,405 |
MH63 | Minghui 63 | O. sativa-AA (Asian rice) | XI-adm | GCA_001623365.2 | 387.43 | 53.41% | 38,047 |
IR64 | IR 64 | O. sativa-AA (Asian rice) | XI−1B1 | GCA_009914875.1 | 386.7 | 53.55% | 36,065 |
ZS97 | Zhenshan 97 | O. sativa-AA (Asian rice) | XI−1A | GCA_001623345.2 | 387.33 | 53.41% | 37,651 |
Lima | LIMA::IRGC 81487-1 | O. sativa-AA (Asian rice) | XI−3A | GCA_009829395.1 | 392.63 | 48.93% | 36,217 |
KYG | KHAO YAI GUANG::IRGC 65972-1 | O. sativa-AA (Asian rice) | XI−3B1 | GCA_009831295.1 | 393.74 | 53.93% | 36,212 |
GoSa | GOBOL SAIL (BALAM)::IRGC 26624-2 | O. sativa-AA (Asian rice) | XI−2A | GCA_009831025.1 | 391.77 | 51.01% | 36,222 |
LiXu | LIU XU::IRGC 109232-1 | O. sativa-AA (Asian rice) | XI−3B2 | GCA_009829375.1 | 392.03 | 51.66% | 36,378 |
LaMu | LARHA MUGAD::IRGC 52339-1 | O. sativa-AA (Asian rice) | XI−2B | GCA_009831355.1 | 390.2 | 51.25% | 36,299 |
N22 | N22 (N 22::IRGC 19379-1) | O. sativa-AA (Asian rice) | cA1 | GCA_001952365.2 | 382.95 | 52.82% | 36,262 |
NaBo | NATEL BORO::IRGC 34749-1 | O. sativa-AA (Asian rice) | cA2 | GCA_009831335.1 | 383.72 | 50.64% | 36,196 |
O. ruf | O. rufipogon PNG91-7::IRGC 106523-1 | O. rufipogon-AA (Asian rice progenitor) | – | GCA_023541355.1 | 462.58 | 56.54% | – |
O. pun | O. punctata:: IRGC 105690 | O. punctata-BB (Outgroup) | – | GCA_000573905.2 | 422.39 | 53.21% | – |
