Table 2 Inversion rate estimations

From: Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice

Comparison

Time to MRCA (MY)

Number of inversion polymorphisms

Inversion mutation rate (IR)

Raw

Usablea

Number of inversions per million years

O. punctata - NB

2.5

323

323

64.6

O. rufipogon - NB

0.5

230

230

230

GJ-temp vs other GJ (average)

0.0142

82.96

21.27

749

Average of pairs of GJ genomes

0.0142

 

20.86

735

  1. MRCA most recent common ancestor, MY million years.
  2. aInversions shared with subpopulations other than GJ were excluded to avoid counting regions that were possibly introgressed from populations with higher times to MRCA.
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