Table 1 Reference denoising algorithm summary
From: IMC-Denoise: a content aware denoising pipeline to enhance Imaging Mass Cytometry
Acronym | Full name | Algorithm details |
|---|---|---|
NTHM | Supplementary Note 2.1 | |
Supplementary Algorithm 3 | ||
MTHM | Median-based threshold hot pixel removal method10 | Supplementary Note 2.1 |
Supplementary Algorithm 4 | ||
N2V | Noise2Void24 | Supplementary Note 2.2.1 |
MN2V | Modified Noise2Void with Anscombe transformation27 | Supplementary Note 2.2.2 |
N2T | Noise2True34, only simulations used | Supplementary Note 2.2.3 |
GAUSS | Gaussian filter with kernel size of 5x5 and standard deviation of 0.8 | Supplementary Note 2.3.1 |
NLM | Non-local means algorithm22 | Supplementary Note 2.3.2 |
BM3D | Batch-matching and 3D filtering algorithm23 with Anscombe transformation | Supplementary Note 2.3.3 |
