Fig. 5: Genome-wide analysis of 197 Collinsella aerofaciens genomes.
From: The genomic landscape of reference genomes of cultivated human gut bacteria
a Whole-genome phylogenetic tree constructed based on ANI. According to the distance of 0.05, the genome can be divided into 19 clades. b Consistency between the genomic SNP phylogenetic tree and the 5 groups of CDS sequences. Tip shapes and colors represent the genome source and ANI clade, respectively. Dashed lines indicate the singletons in group 2 and group 4. For each genome, the first layer represents the group, the second layer denotes the country where the strain was isolated. c Distribution of InDels and SNPs in CDS regions and intergenic regions for each genome. Colors represent the group. d The InDel and SNP variation statistics in CDS regions and intergenic regions. Colors represent the group. P values are from Wilcoxon rank-sum test (two-sided) (****P < 0.0001).
