Table 1 Putative DNA methylation pathway genes in Chinese pine
From: The methylation landscape of giga-genome and the epigenetic timer of age in Chinese pine
Function | Arabidopsis ID | Lengtha | P. tabuliformis orthologs ID (gene name) |
|---|---|---|---|
DNMT | NULL | 320 | Pt9G37000 (PtDNMT) |
MET1 | VIM1,2,3,4,5,6 | 825 | Pt3G11180 (PtPHD74) |
MET1,2a,2b,3 | 1593 | Pt0G32170 (PtMET2), Pt3G41150 (PtMET1), Pt5G59130 (PtMET3), Pt8G32940 (PtMET5), Pt8G32930 (PtMET4), Pt0G29110 (PtMET6) | |
CMT3 | SUVH4 | 872 | Pt2G30570 (PtSDG61) |
CMT2 | 915 | Pt7G39700 (PtCMT1), PtXG16440 (PtCMT2) | |
CMT3 | NULL | ||
DDM1 | DDM1 | 864 | Pt4G62300 (PtCHR114), PtXG05130 (PtCHR115) |
Pol IV recruit | CLSY1/CLSY2 | 1408 | Pt9G02470 (PtCHR63), Pt2G42820 (PtCHR70) |
SHH1/SHH2 | 375 | Pt2G40750, Pt7G53550, PtJG51000 | |
Pol IV | NRPD1 | 1820 | PtQG02050 (PtNRPD1a) |
Pol IV + V | NRPD2/NRPE2 | 1349 | Pt5G05590 (PtNRPD2a), Pt5G05690 (PtNRPD2b) |
Pol IV + V | NRPD4/NRPE4 | NULL | |
Pol V | NRPE1 | 2074 | Pt4G34230 (PtNRPD1b) |
Pol V | NRPE5 | 205 | PtJG39850 |
Pol V | NRPE9B | 114 | PtJG43430 |
Pol V recruit | DRD1 | 1108 | Pt7G00020 (PtDRD1), Pt7G54730 (PtCHR65) |
DMS3 | 244 | Pt1G51730, Pt6G61000, Pt9G06690 | |
RDM1 | NULL | ||
SUVH2/9 | 1072 | Pt3G09850 (PtSDG74), Pt2G72700 (PtSDG58) | |
RdDM | RDR2 | 1114 | Pt8G55630 (PtRDR2) |
DCL1 | 2126 | PtQG05760 (PtDCL1) | |
DCL2 | 1446 | Pt2G18310 (PtDCL2) | |
DCL3 | 1708 | Pt6G13100 (PtDCL3a), Pt6G12740 (PtDCL3b) | |
DCL4 | 938 | PtXG43510 (PtDCL4) | |
HEN1 | 626 | PtJG05560 (PtHEN1) | |
AGO4 | 479 | Pt8G51780 (PtAGO4a), Pt8G50630 (PtAGO4b) | |
KTF1 | NULL | ||
IDN2 | 644 | Pt6G26580, PtXG08730 | |
SUVR2 | NULL | ||
DMS4 | 275 | PtJG19910 | |
UBP26 | 1089 | Pt4G33520 (PtUBP2) | |
DRM2 | 746 | Pt1G57510 (PtDRM2a), Pt5G22840 (PtDRM2b) | |
LDL1 | 828 | Pt3G31600 (PtSWI3K) | |
LDL2 | 750 | Pt1G72830 (PtSWI3H) | |
JMJ14 | 1189 | Pt5G45430 (PtJMJ5) | |
Others | HDA6 | 483 | Pt2G00630 (PtHDA2), Pt2G00820 (PtHDA3) |
SGS3 | 776 | Pt3G67490 (PtSGS3) | |
RDR6 | 1189 | PtJG19220 (PtRDR6b), PtJG21650 (PtRDR6a) | |
MORC6 | 885 | Pt9G02650 (PtMORC1) |
