Fig. 2: Computational performance on simulated datasets. | Nature Communications

Fig. 2: Computational performance on simulated datasets.

From: Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2

Fig. 2

All assemblers were run with 48 threads and assemblies were generated for 2, 10, and 18 million simulated reads of cDNA and dRNA samples. Peak memory usage was measured in gigabytes (GB), and runtime was measured in wall-clock hours. Both axes are in logarithmic scale. For StringTie2, StringTie2_GTF, and FLAIR, performance figures include read alignment and generation of indexed BAM files. Source data are provided as a Source Data file.

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