Fig. 2: Contiguity, correctness, and resource usage of GoldRush assemblies compared to Flye, Redbean, and Shasta genome assemblies for three human individuals (NA24385, HG01243, and HG02055), O. sativa, and S. lycopersicum.
From: Linear time complexity de novo long read genome assembly with GoldRush
Human individuals NA24385, HG01243, and HG02055 are represented as circles, triangles, and squares, respectively, in a and b. O. sativa and S. lycopersicum are represented as circles and triangles, respectively, in c and d. GoldRush, Flye, Redbean, and Shasta are colored yellow, purple, red, and blue, respectively. The genome assemblies were assessed using QUAST for their contiguity and correctness. Extensive misassemblies and NGA50 length, as determined by QUAST, are shown on the horizontal and vertical axes, respectively, in a and c. Wall clock run time (h) and peak memory (GB) usage of the genome assembly processes were recorded using the unix time command and shown on the horizontal and vertical axes, respectively, in b and d.
