Table 1 Identification of five “viruses of concern” and their prevalence among bats
Virus name | Genome identity to known human or livestock pathogens | Bat host species | Prevalence (positive/total individuals) | Genome size | |
|---|---|---|---|---|---|
Bat SARS-like coronavirus LS1 | SARS-CoV Tor2 93.1% | Rh. thomasi | 2/14 | 29,756 bp | Complete genome |
Rh. macrotis | 1/2 | ||||
Bat SARS-like coronavirus CX1 | SARS-CoV-2 Wuhan-Hu-1 92.3% | Rh. pusillus | 1/16 | 29,844 bp | Complete genome |
Rh. marshalli | 1/7 | ||||
Bat HKU2-like coronavirus LS1 | SADS-CoV isolate 162140 93.6% | Rh. thomasi | 1/14 | 3087 bp | Partial genome |
Bat orthoreovirus BS1 | Porcine reovirus SHR-A 69.2%~94.1% (Segments) 86.0% (Whole genome) | As. stoliczkanus | 3/35 | 23,245 bp | Complete genome |
Hi. armiger | 3/11 | ||||
Hi. larvatus | 1/13 | ||||
Rh. marcrotis | 1/2 | ||||
Bat rotavirus A type CX1 | Human rotavirus A RVA/Human-wt/CHN/M2-102/2014/G3P[3] 86.8%~95.5% (Segments) 90.6% (Whole genome) | As. stoliczkanus | 9/35 | 18,189 bp | Complete genome |
Rh. thomasi | 1/14 | ||||
Rh. pusillus | 1/16 | ||||
Rh. marshalli | 1/7 | ||||
Rh. pearsonii | 1/2 | ||||
