Fig. 2: Finding functional residues in the training proteins.

A, D, G Functional positions (in blue) identified using experiments. B, E, H Functional positions (in blue) identified using our model. C, F, I Statistics on the accuracy of residue level predictions of functional residues. For each of the three proteins we show the number of true positives (upper-left corner), true negatives (bottom-right corner), false positives (bottom-left corner) and false negatives (top-right).