Table 1 Summary of mapping, depth, coverage, and damage statistics for the 13 historic Xci genomes
ID | Protocol | Million reads | Merged reads (%) | Xci reads (%) | Chromosome | |||
|---|---|---|---|---|---|---|---|---|
Depth (X) | Coverage at 1X (%) | Insert length (mean ± SD, nt) | Deamination rate at terminal position (%) | |||||
HERB_1845 | TruSeq Nano | 414.3 | 97.78 | 10.39 | 82.1 | 98.3 | 50.4 ± 23.0 | 3.68 |
HERB_1884 | TruSeq Nano | 246.8 | 97.82 | 10.48 | 55.6 | 98.1 | 46.2 ± 16.6 | 3.22 |
HERB_1911 | TruSeq Nano | 365.2 | 99.50 | 2.05 | 32.4 | 98.2 | 69.1 ± 22.3 | 3.70 |
HERB_1915 | TruSeq Nano | 217.3 | 97.12 | 6.04 | 39.3 | 98.1 | 47.9 ± 17.9 | 2.81 |
HERB_1937 | TruSeq Nano | 220.9 | 98.89 | 0.82 | 6.2 | 94.6 | 42.7 ± 12.7 | 3.65 |
HERB_1946 | TruSeq Nano | 262.5 | 98.00 | 7.52 | 64.3 | 98.2 | 57.9 ± 29.5 | 1.81 |
HERB_1974 | TruSeq Nano | 260.8 | 96.97 | 6.80 | 35.9 | 97.9 | 41.1 ± 9.3 | 2.09 |
HERB_1852 | BEST | 314.9 | 99.97 | 4.81 | 63.7 | 97.8 | 70.9 ± 43.6 | 1.89 |
HERB_1854 | BEST | 113.0 | 99.96 | 10.76 | 54.1 | 98.3 | 75.7 ± 42.8 | 1.22 |
HERB_1859 | BEST | 159.5 | 99.83 | 5.31 | 41.8 | 97.7 | 73.9 ± 33.8 | 1.76 |
HERB_1865 | BEST | 156.5 | 99.04 | 4.91 | 49.8 | 98.2 | 88.1 ± 39.2 | 1.57 |
HERB_1922 | BEST | 120.9 | 99.66 | 27.10 | 96.2 | 97.3 | 67.9 ± 29.3 | 1.22 |
HERB_1963 | BEST | 56.3 | 99.89 | 14.63 | 43 | 98.0 | 74.7 ± 32.3 | 1.25 |
