Fig. 3: Identification of genes with signatures of positive selection. | Nature Communications

Fig. 3: Identification of genes with signatures of positive selection.

From: Accurate haplotype construction and detection of selection signatures enabled by high quality pig genome sequences

Fig. 3

a The number of variants with top 1% FST in each pairwise design (TBT vs. EHL; TBT vs. pDLY; BMX vs. EHL; BMX vs. pDLY) and their intersection. pDLY, Duroc and Large white and Landrace and their crosses; EHL, Erhualian; BMX, Bamaxiang; TBT, Gansu Tibetan and Sichuan Tibetan and Tibetan Tibetan and Yunnan Tibetan. b The regional plot for FST at NPR3 locus. Each dot represents a variant. The shading indicates a clear signature of positive selection. c The EHHs (extended haplotype homozygosity) are calculated based on a proxy variant 16_18869137 in the above four populations. Colored lines represent breeds.

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