Fig. 2: Characterization of the graph-genome of 47 de novo bovine genomes and distributions of structural variants (SVs) across these genomes and 386 individuals.
From: Evolutionary origin of genomic structural variations in domestic yaks
a Decrease and increase of the core nodes (red) and pan nodes (red + blue) respectively with the increase in number of yak, cattle and bison/wisent/gaur (BWG) genome assemblies added to the graph-genome. b The number of nodes in each discovery class (core, near-core, and variable) is shown per assembly. c Diagrams of diverse SV types from bovine graph pangenome based on the yak reference genome BosMut3.0. The bar chart shows the average number and length of each type of SV separately. The pie chart shows the number of genes affected by SV as a proportion of the overall number of genes. d Genomic features and variation landscape across the reference genome assembly. SNPs, INDELs, and SVs from resequencing data. e Pan-SV and core-SV length with 386 individuals of 7 bovine species. The light pink and green lines at the right indicate the core and pan SVs, respectively of the cattle pangenome.
