Table 1 Assembly and annotation statistics for the 28 novel genomes generated in this study
From: Evolutionary origin of genomic structural variations in domestic yaks
Sample ID | Subpopulation | Contig N50 (Mb) | Assembly Size (Gb) | Repetitive Content (%) | Quality value | Gene number |
|---|---|---|---|---|---|---|
DYGS03 | B. grunniens | 3.64 | 2.63 | 42 | 38.4 | 23,668 |
DYGS37 | B. grunniens | 3.30 | 2.66 | 42 | 39.5 | 24,224 |
DYNP09 | B. grunniens | 60.72 | 2.80 | 58 | 41.1 | 23,968 |
DYPK16 | B. grunniens | 51.57 | 2.74 | 57 | 40.9 | 23,368 |
DYQH01 | B. grunniens | 1.02 | 2.65 | 42 | 37.9 | 23,278 |
DYQH13 | B. grunniens | 32.50 | 2.74 | 43 | 39.9 | 24,586 |
DYSC21 | B. grunniens | 22.70 | 2.78 | 44 | 37.4 | 23,616 |
DYSC29 | B. grunniens | 28.51 | 2.70 | 56 | 40.0 | 23,364 |
DYXJ17 | B. grunniens | 35.63 | 2.74 | 43 | 38.3 | 24,138 |
DYXZ30 | B. grunniens | 69.40 | 2.75 | 55 | 39.3 | 23,812 |
DYXZ38 | B. grunniens | 28.95 | 2.81 | 45 | 40.0 | 24,656 |
DYXZ91 | B. grunniens | 0.85 | 2.61 | 42 | 38.3 | 23,738 |
DYXZ92 | B. grunniens | 73.03 | 2.81 | 60 | 68.3 | 23,712 |
DYYN03 | B. grunniens | 40.36 | 2.69 | 43 | 40.7 | 24,336 |
DYYN14 | B. grunniens | 56.41 | 2.74 | 43 | 41.8 | 23,906 |
WY11 | B. mutus | 103.53 | 2.93 | 52 | 60.0 | 25,006 |
WY12 | B. mutus | 60.75 | 2.75 | 44 | 40.7 | 23,776 |
WY15 | B. mutus | 13.97 | 2.72 | 43 | 40.0 | 25,018 |
WY16 | B. mutus | 94.41 | 3.03 | 63 | 56.6 | 25,002 |
WY17 | B. mutus | 22.06 | 2.74 | 43 | 40.2 | 25,040 |
WY18 | B. mutus | 65.03 | 2.97 | 57 | 62.1 | 25,093 |
CDMC01 | B. taurus | 8.48 | 2.72 | 43 | 41.4 | 23,760 |
TC13 | B. taurus | 18.60 | 2.89 | 62 | 40.0 | 24,374 |
TC14 | B. taurus | 13.62 | 2.86 | 60 | 39.0 | 23,866 |
TC21 | B. taurus | 2.53 | 2.65 | 42 | 23.0 | 24,054 |
WNC04 | B. indicus | 75.04 | 2.81 | 60 | 64.8 | 22,272 |
Brahman01 | B. indicus | 66.70 | 2.84 | 60 | 66.5 | 25,344 |
ZMC01 | B. taurus × indicus×grunniens | 1.92 | 2.69 | 42 | 33.3 | 23,372 |