Table 3 Summary of silver-standard datasets to benchmark Ambigram with the state-of-the-art
From: Deciphering complex breakage-fusion-bridge genome rearrangements with Ambigram
Dataset | Standard | Cancer type | Protocol | Data format | Originally inferred by | Ambigram |
|---|---|---|---|---|---|---|
HCC827 | Silver | Lung | PE | SV+CN | AA + AC | ✓ |
HCC827 | Silver | Lung | PE+OM | SV+CN | AA + AC + AR | ✓ |
PD4875 | Silver | Breast | PE | SV+CN | Greenman et al. | ✓ |
PD3641 | Silver | Pancreatic | PE | SV+CN | BFBFinder | ✓ |
