Fig. 2: SiGra accurately identifies spatial domains in the single-cell spatial profiles of NanoString CosMx SMI.
From: SiGra: single-cell spatial elucidation through an image-augmented graph transformer
a Spatial regions of ground truth and those detected by different methods, including SiGra, BayesSpace, and Seurat. b Boxplot of the adjusted Rand index (ARI) scores of six methods in all 20 FOVs of lung cancer tissue. In the boxplot, the centreline, box limits and whiskers denote the median, upper and lower quartiles, and 1.5× interquartile range, respectively. Source data are provided as a Source Data file. c Spatial regions of two FOVs detected by different methods, including SiGra, BayesSpace, and Seurat.
