Fig. 5: Integration results on human hematopoiesis data.
From: scBridge embraces cell heterogeneity in single-cell RNA-seq and ATAC-seq data integration
a UMAP visualization of the joint embeddings learned by scBridge, scJoint, Seurat, and Portal under 75% dropout on scRNA-seq data, where cells are colored by types. b The agreement between labels transferred by scBridge, Seurat, and the manual annotations under 75% dropout on scRNA-seq data. A clearer diagonal structure indicates better agreement. c The F1 harmonized silhouette score and the weighted F1 label transfer accuracy of scBridge and six baselines with different dropout corruption rates on scRNA-seq and scATAC-seq data. Five random experiments are conducted under each dropout rate. Each boxplot ranges from the upper and lower quartiles with the median as the horizontal line and whiskers extend to 1.5 times the interquartile range. Source data are provided as a Source Data file.
