Fig. 5: Reconstruction of the transmission network based on the inferred likelihood.
From: Inferring bacterial transmission dynamics using deep sequencing genomic surveillance data
a Ground truth of transmissions from Citrobacter rodentium ICC180, including transmission failures (chain breaks). Colors indicate transmission chains. b Transmission network from inferred likelihood values, using the time of infection as a prior. Transmission failures that were recognized by our method are highlighted. Source data are provided as a Source Data file.
