Table 1 Dataset and site information

From: Malaria surveillance reveals parasite relatedness, signatures of selection, and correlates of transmission across Senegal

Codes

Location

 

WGS

Barcode

Site

Map

Region

District

Incidence

M

M

P

GMK

STL

Saint Louis

Richard Toll

0.5

0

4

0

ROS

STL

Saint Louis

Richard Toll

0.8

0

5

2

KTL

KTL

Kaolack

Ndoffane

1.5

6

9

10

TAO

STL

Saint Louis

Richard Toll

1.6

0

2

0

NJC

STL

Matam

Matam

2

3

4

6

ROB

STL

Saint Louis

Richard Toll

2.1

0

9

3

CSS

STL

Saint Louis

Richard Toll

2.1

0

10

12

SLP

SLP

Thiès

Thiès

2.3

40

51

19

DEG

DEG

Dakar

Pikine

2.4

14

26

11

MDR

MDR

Tambacounda

Bakel

4.4

5

13

9

SED

SED

Sedhiou

Sedhiou

4.7

18

23

11

SES

DBL

Diourbel

Diourbel

7.5

13

90

12

KAF

KAF

Ziguinchor

Diouloulou

13.1

16

23

20

KML

KML

Matam

Kanel

13.2

7

10

11

SMS

DBL

Diourbel

Diourbel

15.2

3

39

15

TBA

TBA

Diourbel

Touba

19.1

41

61

17

GAB

GAB

Tambacounda

Bakel

64.3

33

47

25

VLG

VLG

Kolda

Velingara

127.8

21

41

53

KLD

KLD

Kolda

Kolda

208.3

32

70

40

KDG

KED

Kedougou

Kedougou

414.8

45

42

39

TAM

TAM

Tambacounda

Tambacounda

611.2

13

40

35

TBK

KED

Kedougou

Tomboronkoto

937.1

13

16

18

MAK

KED

Kedougou

Kedougou

1076.9

17

26

35

TOTAL

340

661

403

  1. Breakdown of samples from each site in the study. Each site has a three-letter code; in some cases, multiple sites are clustered into a single site with its own code for display on maps. Incidence: annual incidence per 1000; WGS: number of samples with whole genome sequence data; Barcode: samples with barcode genotyping data broken down by their classification as monogenomic (M) or polygenomic (P). Three sites with a single barcode sample have been omitted.