Fig. 1: Benchmarks in simulated modern populations.
From: Haplotype-based inference of recent effective population size in modern and ancient DNA samples
a Ne estimates obtained from HapNe-IBD, IBDNe, HapNe-LD, and GONE on simulated SNP-array data (256 individuals) for four different demographic scenarios. The light and dark-shaded areas correspond to 95% and 50% confidence intervals estimated using bootstrap quantiles. b Accuracy of the different methods on the “Bottleneck" demographic model as a function of sample size. c Total running time for each method (including IBD segment detection and within-chromosome LD estimation, see Methods). In (b and c), we report the mean value across ten independent simulations as well as error bars representing 1.96 × s.e.m.
