Table 1 Summary of major genes under selection in indicine cattle

1

81.58–81.69

0.74

0.23

3.42

LIPH

Hair development

²¹

7

43.18–43.29

0.69

0.49

2.62

FGF22

Hair development

⁷⁹

7

50.14–50.31

0.83

0.57

0.78

LRRTM2, CTNNA1, SIL1, MZB1, PROB1, PAIP2, SLC23A1

Brain development, muscle development, antiviral immunity, reproduction, vitamin C transporters

⁵

7

50.64–51.15

0.84

0.58

2.26

SPATA24, DNAJC18, TMEM173, UBE2D2, ECSCR, CXXC5, PSD2, NRG2

Fertility, reproduction, heat stress

⁵

8

53.22–53.27

0.64

0.32

2.64

VPS13A

Blood circulation

⁸⁰

16

50.50–50.67

0.74

0.22

3.02

PRKCZ, FAAP20

Light response, DNA damage

^{81, 82}

19

26.38–26.45

0.72

0.34

3.62

SPAG7, PFN1, KIF1C, CAMTA2, ENO3

Antiviral immunity, skeletal development, neurodegenerative disease, cardiac growth, muscle development,

^{16,17,18, 20, 83,19}

19

27.40–27.61

0.74

0.94

2.96

WRAP53, TMEM88

DNA damage, heart development

^{84, 85}

22

55.80–55.85

0.64

0.15

2.20

TAMM41

Heart valve development

⁸⁶