Table 3 Genomic datasets used in the work

From: The PENGUIN approach to reconstruct protein interactions at enhancer-promoter regions and its application to prostate cancer

 

LNCaP

LHSAR

HiChIP H3K27ac

5 replicates (ref. 11)

3 replicates (this study)

RNA-seq

2 replicates (Ref. 71)

2 replicates (ref. 71)

ChIP-seq H3K27ac

1 replicate (Ref. 11)

2 replicates (this study)

ChIP-seq CTCF

2 replicates (Ref. 22)

2 replicatesa (ref. 22)

  1. aNot from LHSAR but from human epithelial cells of the prostate.
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