Table 1 Comparison of runtimes on CATH-663 targets
From: Merizo: a rapid and accurate protein domain segmentation method using invariant point attention
Method | Hardware | Average time per target (s) | Total runtime (s) | Relative |
|---|---|---|---|---|
Merizo | GPU | 0.112 | 74.32 | 1.00 |
| Â | CPU | 1.095 | 725.77 | 9.77 |
UniDoc | CPU | 0.078 | 51.75 | 0.70 |
SWORD | CPU | 9.602 | 6366.00 | 85.65 |
DeepDom | GPU | 0.020 | 13.29 | 0.18 |
| Â | CPU | 0.055 | 36.69 | 0.49 |
Eguchi-CNN | CPU | 4.475 | 2966.77 | 39.92 |
