Fig. 9: Imputation for recovering the spatial patterns of marker genes on both Visium and Stereo-seq data. | Nature Communications

Fig. 9: Imputation for recovering the spatial patterns of marker genes on both Visium and Stereo-seq data.

From: GNTD: reconstructing spatial transcriptomes with graph-guided neural tensor decomposition informed by spatial and functional relations

Fig. 9

a The visualizations of 12 layer-specific marker genes (PCP4, PVALB, ENC1, CCK, KRT17, MOBP, ATP2B4, RASGRF2, LAMP5, NEFH, NTNG2, and B3GALT) of ISH images, raw data, and imputed data generated by four tensor-based models CoSTCo, DTD, FIST, and GNTD at their best rank on the DLPFC 151673 section from Visium. b The visualizations of 12 region-specific marker genes (MBP, PENK, CPNE4, GABRA1, GAD1, SLC6A11, CCK, KCTD12, COX7A2, ATP2B4, CABIN1, and FASN) of ISH images, raw data, and imputed data generated by four tensor-based models CoSTCo, DTD, FIST, and GNTD at their best rank on the mouse olfactory bulb section from Stereo-seq.

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