Table 1 Performance comparison of ECOLE with CNLearn on 28 samples from the 1000 Genomes Project

From: ECOLE: Learning to call copy number variants on whole exome sequencing data

Tool

DEL Precision

DUP Precision

Overall Precision

DEL Recall

DUP Recall

Overall Recall

DEL F1 Score

DUP F1 Score

Overall F1 Score

CNLearn

0.084

0.221

0.152

0.002

0.010

0.006

0.004

0.019

0.012

ECOLE

0.834

0.679

0.757

0.541

0.500

0.520

0.656

0.675

0.617

  1. Note that these 28 samples are not included in the training set of ECOLE and the predictions are obtained via personal communication with the authors.
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