Fig. 4: Applying GSDensity to single-cell trajectory analysis reveals developmental stage related pathways.
From: Pathway centric analysis for single-cell RNA-seq and spatial transcriptomics data with GSDensity
a UMAP visualization of the inferred pseudotime in E17.5 mouse cerebral cortex data. b Pathway gene sets can be grouped into 8 clusters based on their pattern along the trajectory. Source data are provided as a Source Data file. Highlighting the cell relevance to a representative pathway from each of the 8 clusters (c: Cluster-1; d: Cluster-2; e: Cluster-3; f: Cluster-4; g: Cluster-5; h: Cluster-6; i: Cluster-7; j: Cluster-8).
