Table 2 Basic information for simulated datasets (scRNA-seq) for benchmarking experiments
From: Pathway centric analysis for single-cell RNA-seq and spatial transcriptomics data with GSDensity
Data | # Genes | # Cells | # Cell types | Sparsity |
|---|---|---|---|---|
SD1-3 | 5000 | 4500 | 3; stable | ~65% |
SD4-6 | 5000 | 4500 | 3; stable | ~78% |
SD7-9 | 5000 | 4500 | 3; stable | ~90% |
SD10-12 | 5000 | 4000 | 4; dynamic | ~65% |
SD13-15 | 5000 | 4000 | 4; dynamic | ~78% |
SD16-18 | 5000 | 4000 | 4; dynamic | ~90% |
SD19-21 | 5000 | 4800 | 6; dynamic | ~65% |
SD22-24 | 5000 | 4800 | 6; dynamic | ~78% |
SD25-27 | 5000 | 4800 | 6; dynamic | ~90% |
