Fig. 6: Case studies of Nucleosome-CHD4 complex.
From: Cryo-EM structure and B-factor refinement with ensemble representation
a A nucleosome structure in complex with chromatin remodelling enzyme CHD4 (EMD-10058, PDB ID: 6RYR) is shown (worm representation), with the width proportional to the TEMPy-ReFF refined B-factor, and colour based on local resolution (computed with ResMap). b Deposited model (left, blue) and the ensemble of models and ensemble map calculated with TEMPy-ReFF (right, orange), shown inside the cryo-EM map (transparent grey). c SMOCf plot for each chain. The deposited model is shown in blue, and the TEMPy-ReFF model is shown in orange. d Zoom-in on some of the DNA base pairs (chain I/J, base pair 54) fitted in the map (mesh representation). The deposited model is shown in blue, TEMPy-ReFF model in orange and hydrogen bonds are indicated in cyan.
