Fig. 6: Processing 200 HeLa proteomes with AlphaPept.
From: AlphaPept: a modern and open framework for MS-based proteomics
A total of 200 DDA HeLa cell proteomes – the ten-cycle long-term performance test from Kuster and coworkers (181 Gbyte from PXD015087)59– was analyzed by AlphaPept. a Identification performance at the protein group level. b Identification performance at the precursor level. c Quantification performance with or without MaxLFQ optimization. d Timing of the AlphaPept computational pipeline for the entire 200 HeLa proteome run. Search through scoring are highly optimized and contributes little to overall computation time.
