Table 1 Summary of systems simulated
From: Hydrophobic mismatch drives self-organization of designer proteins into synthetic membranes
Measurement | Figure | Protein | Membrane composition | Simulation time [µs] × replicates | Total simulation time per lipid composition [µs] |
|---|---|---|---|---|---|
Membrane thickness and compression | Single protein (20, 28, 50 Å proteins) | DOPC, DYPC, or DGPC | 6 µs × 3 | 18 µs | |
Lipid-protein interactions | Fig. 3A | Single protein (20 or 50 Å proteins) | 42 DYPC:28 DPPC: 30 CHOL | 6 µs x 3 | 18 µs |
Protein-protein interactions | Supplementary Fig. 15 | 20 Å – 20 Å proteins | DOPC or 42 DYPC:28 DPPC: 30 CHOL | 6 µs x 3 | 18 µs |
Protein-protein interactions | Supplementary Fig. 15 | 50 Å – 50 Å proteins | DOPC or 42 DYPC:28 DPPC: 30 CHOL | 6 µs x 3 | 18 µs |
Protein-protein interactions | 20 Å – 50 Å proteins | DOPC or 42 DYPC:28 DPPC: 30 CHOL | 6 µs x 9 | 54 µs |
