Table 1 ISCU2-bound metal to ligand and sulfur to sulfur distances in various structures of free ISCU2 or core ISC complexes

From: Mechanism and structural dynamics of sulfur transfer during de novo [2Fe-2S] cluster assembly on ISCU2

Method

Solution NMR

X-ray

X-ray

Cryo-EM

Cryo-EM

Cryo-EM

Cryo-EM

Resolution

3.32 Å

3.32 Å

2.75 Å

3.20 Å

2.58 Å

2.49 Å

Reference

Boniecki (2017)15

Boniecki (2017)15

This work

Fox (2019)17

This work

This work

Organism

Mus musculus

Homo sapiens

Homo sapiens

Homo sapiens

Homo sapiens

Homo sapiens

Homo sapiens

PDB code

1WFZ

5WLW

5WLW

8PKA

6NZU

8PK9

8PK8

Structure

Zn-U

(Zn-NIAU)2

(Zn 201.D)

(Zn-NIAU)2

(Zn 201.H)

(Fe-NIAU)2

(Zn-NIAUX)2

(Fe-NSIAUSX)2

(Fe-NIAUSX)2

C69

2.3#

6.1

4.8

3.7

10.0

9.6

9.7

D71 OD1

3.5

3.1

2.9#

2.1#

2.3#

2.1#

2.0#

D71 OD2

2.1#

2.4#

2.4#

2.2#

2.3#

2.1#

2.1#

C95

2.3#

2.8#

2.9#

2.3#

2.8a

2.4#

2.3#

H137 NE2

2.1#

2.8#

3.2

4.8

10.5

9.8

9.9

C138

3.6

3.9

3.9

4.7

2.9#

2.3#

2.3#

C381 (NFS1)

2.9#

2.8#

2.4#

12.3

2.3#

20.9

Water

2.0#

2.0#

C381-C69

 

4.2

4.8

4.3

 

9.6

 

C381-C95

 

5.2

4.8

3.8

 

3.4

 

C381-C138

 

6.3

6.5

6.5

 

3.6

 
  1. The Zn or Fe distances (in Å) to the indicated ligands are given in the top part, and distances smaller than 3 Å are marked by #. The bottom part shows the distances between the Cys381NFS1 sulfur and indicated CysISCU2 sulfurs.
  2. aThe resolution of the map obtained in this study results in some ambiguity in sidechain positioning. Manual re-refinement of the model to the published density resulted in a measured distance of 2.3 Å.