Table 1 List and characteristics of Y-loop localizing lncRNAs
lncRNA | Chromosome | Gene size | Intron | Proximal genes | Poly-A | Conserved |
|---|---|---|---|---|---|---|
CR42657 | X | 1 kb | 0.2 kb, 64 bp | CR44016, nej, btd | No | No |
CR43193 | X | 1 kb | 50 bp | Shakb* | Yes | Yes |
CR43431 | 3L | 5 kb | 2 kb, 54 bp, 67 bp | CR32111, CR44552, CR44553 | No | Yes |
CR43622X | 2R | 0.6 kb | N | hbs | Yes | Yes |
CR43835X | X | 0.9 kb | 58 bp, 62 bp, 62 bp | CR43279, CG32719 | No | No |
CR43839√ | 2L | 0.8 kb | N | CR45722, CR45723, tj | Yes | Yes |
CR43862√ | X | 0.9 kb | 91 bp, 77 bp | CR45610, run | No | Yes |
CR44017 | 3R | 0.6 kb | N | gpp* | Yes | Yes |
CR44114 | 2L | 0.9 kb | 58 bp | rotini | No | Yes |
CR44206 | 2R | 15 kb | 7.2 kb, 6 kb | Dh31-R, CR45312 | No | Yes |
CR44344√ | 2R | 2 kb | 0.4 kb, 57 bp, 0.2 kb | mbl* | No | Yes |
CR44412√ | 2L | 0.8 kb | N | Sytα | No | Yes |
CR44553 | 3L | 1 kb | N | CR43431, CR44552, CR32111 | No | Yes |
CR44606 | 2L | 1 kb | N | sky*, CG42238* | Yes | No |
CR44619 | X | 2.7 kb | 1.4 kb | lncRNA:Vinr, paics | Yes | No |
CR44792√ | 2L | 1 kb | N | CG31475 | No | Yes |
CR44889 | X | 1 kb | 56 bp | meso18E, CG12531 | No | Yes |
CR44977 | 2L | 1.4 kb | 81 bp | Brat* | No | Yes |
CR45174X | 3L | 1 kb | N | Ago3* | No | No |
CR46499 | X | 9.9 kb | 1.3 kb, 1.4 kb + 9 more | CR43614, CR32773*, NorpA* | No | Yes |
CR45805 | 3L | 3.3 kb | N | Pdk1*, CR45400, 45401, 45402 | Yes | Yes |
CR45965 | 3L | 1.4 kb | N | Ten-m*, CR45962*, 45964, 45963 | No | Yes |
CR46278 | 2R | 2 kb | N | lola*, psq* | No | No |
CR40441 | Y | 0.2 kb | N | Ppr-Y* | No | No |
CR45931 | Y | 0.6 kb | N | WDY* | No | Yes |
CR45946 | Y | 0.5 kb | N | kl-3* | No | Yes |
CR45947 | Y | 0.5 kb | N | kl-3* | No | Yes |
CR45948 | Y | 0.9 kb | 61 bp | WDY* | No | Yes |
