Fig. 4: Screenshot of HG002 reference, assembly and read alignment to GRCh38. | Nature Communications

Fig. 4: Screenshot of HG002 reference, assembly and read alignment to GRCh38.

From: De novo diploid genome assembly using long noisy reads

Fig. 4: Screenshot of HG002 reference, assembly and read alignment to GRCh38.

It shows the range of [130,005,418, 130,116,766] in chromosome 3. Small INDELs in all alignments and mismatches in read alignments are not shown. Paternal reference and maternal reference are HG002 paternal references. The assemblies by Flye, Flye+HapDup, and PECAT are from Nanopore reads. The assembly by Hifiasm is from HiFi reads. The assembly by Flye is haplotype-collapsed contigs. The other assemblies are in the dual assembly format. The two sets of contigs are labeled as haplotype 1 and haplotype 2.

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